Publications

• 2024

  An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics

  Stavros Makrodimitris / Bram Pronk / Tamim Abdelaal / Marcel Reinders

• 2023

  Benchmarking variational AutoEncoders on cancer transcriptomics data

  Mostafa Eltager / Tamim Abdelaal / Mohammed Charrout / A.M.E.T.A. Mahfouz / M.J.T. Reinders / Stavros Makrodimitris

• 2023

  Cell type deconvolution of methylated cell-free DNA at the resolution of individual reads

  Pia Keukeleire / Stavros Makrodimitris / Marcel Reinders

• 2023

  Machine learning-based somatic variant calling in cell-free DNA of metastatic breast cancer patients using large NGS panels

  Elisabeth M. Jongbloed / Maurice P.H.M. Jansen / Vanja de Weerd / Jean A. Helmijr / Corine M. Beaufort / Marcel J.T. Reinders / Ronald van Marion / Wilfred F.J. van IJcken / Stavros Makrodimitris

• 2021

  The Power of Universal Contextualized Protein Embeddings in Cross-species Protein Function Prediction

  Irene van den Bent / Stavros Makrodimitris / Marcel Reinders

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